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There still this bug that when I manually (locally) in Power BI desktop refresh my model data, I get the "Apply Changes" message. To solve it I have to go in "Edit queries" and click refresh on every query that is in the "unrefreshed state" and then Close and Apply. This gets rid of the message, but it is a pain to do this every day.
Please somehow solve this bug, you can contact if you need more information. (the bug was introducted with the May/June 2020 update I think)
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